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Does Autofix topology work automatically?

I created a topology with two pipelines - one creating the dataset, other consuming it. It worked perfectly until one of the pipeline was updated to a newer version.

No indication on the dashboard that this needs to be updated until I actually went to investigate because the record counts obviously were wrong. I go on to the topology and it gives me an option to "Autofix". Anyway, "Autofix" option just creates a glitchy situation where the popup goes into some infinite recursion trying to fix it.

Any ideas how to deal with this situation? I realize creating a new topology would probably be the fastest resolution. Looking for something better.

Tried adding the screenshot. Turns out I don't have enough points for that.